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  • Utilise Surv object in ggplot or lattice

    - by Misha
    Anyone know how to take advantage of ggplot or lattice in doing survival analysis? It would be nice to do trellis/facet like survival graphs. So in the end I played around and sort of found a solution for a kaplan meier plot. Apologize for the messy code in taking the list elements into a dataframe, but I couldnt figure out another way. Note: It only works with two levels of stratum. If anyone know how I can use x<-length(stratum) to do this please let me know (in stata I could append to a macro-unsure how this works in R)... ggkm<-function(time,event,stratum) { m2s<-Surv(time,as.numeric(event)) fit <- survfit(m2s ~ stratum) f$time<-fit$time f$surv<-fit$surv f$strata<-c(rep(names(fit$strata[1]),fit$strata[1]),rep(names(fit$strata[2]),fit$strata[2])) f$upper<-fit$upper f$lower<-fit$lower r<-ggplot (f,aes(x=time,y=surv,fill=strata,group=strata))+geom_line()+geom_ribbon(aes(ymin=lower,ymax=upper),alpha=0.3) return(r) }

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  • NSKeyedUnarchiver chokes when trying to unarchive more than one object

    - by ajduff574
    We've got a custom matrix class, and we're attempting to archive and unarchive an NSArray containing four of them. The first seems to get unarchived fine (we can see that initWithCoder is called once), but then the program simply hangs, using 100% CPU. It doesn't continue or output any errors. These are the relevant methods from the matrix class (rows, columns, and matrix are our only instance variables): -(void)encodeWithCoder:(NSCoder*) coder { float temp[rows * columns]; for(int i = 0; i < rows; i++) { for(int j = 0; j < columns; j++) { temp[columns * i + j] = matrix[i][j]; } } [coder encodeBytes:(const void *)temp length:rows*columns*sizeof(float) forKey:@"matrix"]; [coder encodeInteger:rows forKey:@"rows"]; [coder encodeInteger:columns forKey:@"columns"]; } -(id)initWithCoder:(NSCoder *) coder { if (self = [super init]) { rows = [coder decodeIntegerForKey:@"rows"]; columns = [coder decodeIntegerForKey:@"columns"]; NSUInteger * len; *len = (unsigned int)(rows * columns * sizeof(float)); float * temp = (float * )[coder decodeBytesForKey:@"matrix" returnedLength:len]; matrix = (float ** )calloc(rows, sizeof(float*)); for (int i = 0; i < rows; i++) { matrix[i] = (float*)calloc(columns, sizeof(float)); } for(int i = 0; i < rows *columns; i++) { matrix[i / columns][i % columns] = temp[i]; } } return self; } And this is really all we're trying to do: NSArray * weightMatrices = [NSArray arrayWithObjects:w1,w2,w3,w4,nil]; [NSKeyedArchiver archiveRootObject:weightMatrices toFile:@"weights.archive"]; NSArray * newWeights = [NSKeyedUnarchiver unarchiveObjectWithFile:@"weights.archive"]; What's driving us crazy is that we can archive and unarchive a single matrix just fine. We've done so (successfully) with a matrix many times larger than these four combined.

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  • Pass object using JSON

    - by Pankaj
    Hello All right now i am using Json for passing status and message like return Json(new { Success = true, Message = "Save successfully" }); Project model=new Project() Is there any way, i can send model in json also? I am using c# and asp.net mvc

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  • C# Initialize Subclass based on Parent object

    - by ctrlShiftBryan
    So basically I have this public class Ticket{ public TicketNumber {get; set;} ..a bunch more properties... } I want to add some properties using a subclass like this using subsumption instead of composition. public class TicketViewModel(Ticket ticket){ //set each property from value of Ticket passed in this.TicketNumber = ticket.TicketNumber; ...a bunch more lines of code.. //additional VM properties public SelectList TicketTypes {get; private set;} } How do I instantiate the properties without having to write all the lines like this this.TicketNumber = ticket.TicketNumber; Is there some kind of shortcut? Something like in the subclass constructor? this = ticket; Obviously this doesn't work but is their some way so I don't have to modify my subclass if addng/removing a property to the parent class? Or something?

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  • Django: TypeError: 'str' object is not callable, referer: http://xxx

    - by user705415
    I've been wondering why when I set the settings.py of my django project 'arvindemo' debug = Flase and deploy it on Apache with mod_wsgi, I got the 500 Internal Server Error. Env: Django 1.4.0 Python 2.7.2 mod_wsgi 2.8 OS centOS Here is the recap: Visit the homepage, go to sub page A/B/C/D, and fill some forms, then submit it to the Apache server. Once click 'submit' button, I will get the '500 Internal Server Error', and the error_log listed below(Traceback): [Tue Apr 10 10:07:20 2012] [error] [client 122.198.133.250] Traceback (most recent call last): [Tue Apr 10 10:07:20 2012] [error] [client 122.198.133.250] File "/opt/python2.7/lib/python2.7/site-packages/django/core/handlers/wsgi.py", line 241, in __call__ [Tue Apr 10 10:07:20 2012] [error] [client 122.198.133.250] response = self.get_response(request) [Tue Apr 10 10:07:20 2012] [error] [client 122.198.133.250] File "/opt/python2.7/lib/python2.7/site-packages/django/core/handlers/base.py", line 179, in get_response [Tue Apr 10 10:07:20 2012] [error] [client 122.198.133.250] response = self.handle_uncaught_exception(request, resolver, sys.exc_info()) [Tue Apr 10 10:07:20 2012] [error] [client 122.198.133.250] File "/opt/python2.7/lib/python2.7/site-packages/django/core/handlers/base.py", line 224, in handle_uncaught_exception [Tue Apr 10 10:07:20 2012] [error] [client 122.198.133.250] if resolver.urlconf_module is None: [Tue Apr 10 10:07:20 2012] [error] [client 122.198.133.250] File "/opt/python2.7/lib/python2.7/site-packages/django/core/urlresolvers.py", line 323, in urlconf_module [Tue Apr 10 10:07:20 2012] [error] [client 122.198.133.250] self._urlconf_module = import_module(self.urlconf_name) [Tue Apr 10 10:07:20 2012] [error] [client 122.198.133.250] File "/opt/python2.7/lib/python2.7/site-packages/django/utils/importlib.py", line 35, in import_module [Tue Apr 10 10:07:20 2012] [error] [client 122.198.133.250] __import__(name) [Tue Apr 10 10:07:20 2012] [error] [client 122.198.133.250] File "/opt/web/django/arvindemo/arvindemo/../arvindemo/urls.py", line 23, in <module> [Tue Apr 10 10:07:20 2012] [error] [client 122.198.133.250] url(r'^submitPage$', name=submitPage), [Tue Apr 10 10:07:20 2012] [error] [client 122.198.133.250] TypeError: url() takes at least 2 arguments (2 given) When using django runserver, I set arvindemo.settings debug = True, everything is OK. But things changed once I set debug = Flase. Here is my views.py from django.http import HttpResponseRedirect from django.http import HttpResponse, HttpResponseServerError from django.shortcuts import render_to_response import datetime, string from user_info.models import * from django.template import Context, loader, RequestContext import settings def hello(request): return HttpResponse("hello girl") def helpPage(request): return render_to_response('kktHelp.html') def server_error(request, template_name='500.html'): return render_to_response(template_name, context_instance = RequestContext(request) ) def page404(request): return render_to_response('404.html') def submitPage(request): post = request.POST Mall = 'goodsName' Contest = 'ojs' Presentation = 'addr' WeatherReport = 'city' Habit = 'task' if Mall in post: return submitMall(request) elif Contest in post: return submitContest(request) elif Presentation in post: return submitPresentation(request) elif Habit in post: return submitHabit(request) elif WeatherReport in post: return submitWeather(request) else: return HttpResponse(request.POST) return HttpResponseRedirect('404') def submitXXX(): ..... def xxxx(): .... Here comes the urls.py from django.conf.urls import patterns, include, url from views import * from django.conf import settings handler500 = 'server_error' urlpatterns = patterns('', url(r'^hello/$', hello), # hello world url(r'^$', homePage), url(r'^time/$', getTime), url(r'^time/plus/(\d{1,2})/$', hoursAhead), url(r'^Ttime/$', templateGetTime), url(r'^Mall$', templateMall), url(r'^Contest$', templateContest), url(r'^Presentation$', templatePresentation), url(r'^Habit$', templateHabit), url(r'^Weather$', templateWeather), url(r'^Help$', helpPage), url(r'^404$', page404), url(r'^500$', server_error), url(r'^submitPage$', submitPage), url(r'^submitMall$', submitMall), url(r'^submitContest$', submitContest), url(r'^submitPresentation$', submitPresentation), url(r'^submitHabit$', submitHabit), url(r'^submitWeather$', submitWeather), url(r'^terms$', terms), url(r'^privacy$', privacy), url(r'^thanks$', thanks), url(r'^about$', about), url(r'^static/(?P<path>.*)$','django.views.static.serve',{'document_root':settings.STATICFILES_DIRS}), ) I'm sure there is no syntax error in my django project,cause when I use django runserver, everything is fine. Anyone can help ? Best regards

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  • Can't access dojo object property using string variable

    - by Kareem
    I am retrieving a json associative array using a dojo xhrGet request. The data comes back just fine, however I need the app to be able to display the keys and their properties (or values) without knowing the keys beforehand. So, I do the following: function getData() { dojo.xhrGet( { url: "ytd_process.php", handleAs: "json", load: function(response) { for (var key in response) { dojo.byId("boxes").innerHTML+="<div id=\"box\">"+key+":"+response.key+"</div>"; } console.dir(response); // Dump it to the console } }); }; The keys are retrieved and displayed on the page, but the response.key returns undefined. I know the syntax is correct because if I replace .key with an actual key value it will display correctly. It appears it doesn't like a string as the key. Any help or advice would be greatly appreciated. Thank you.

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  • Object C casting

    - by ct2k7
    Hi, I'm trying to cast this statement: [self handError:noConnectionError]; basically, this statement is in a class, which is not the app delegate, but is the .m file of a view, specifically a view after uitableview, which contains its own uiviewtable. The warning that statement gives me is that the error produced may not be apparent to the UIView (view control container).

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  • With regards to urllib AttributeError: 'module' object has no attribute 'urlopen'

    - by Matt
    import re import string import shutil import os import os.path import time import datetime import math import urllib from array import array import random filehandle = urllib.urlopen('http://www.google.com/') #open webpage s = filehandle.read() #read print s #display #what i plan to do with it once i get the first part working #results = re.findall('[<td style="font-weight:bold;" nowrap>$][0-9][0-9][0-9][.][0-9][0-9][</td></tr></tfoot></table>]',s) #earnings = '$ ' #for money in results: #earnings = earnings + money[1]+money[2]+money[3]+'.'+money[5]+money[6] #print earnings #raw_input() this is the code that i have so far. now i have looked at all the other forums that give solutions such as the name of the script, which is parse_Money.py, and i have tried doing it with urllib.request.urlopen AND i have tried running it on python 2.5, 2.6, and 2.7. If anybody has any suggestions it would be really welcome, thanks everyone!! --Matt ---EDIT--- I also tried this code and it worked, so im thinking its some kind of syntax error, so if anybody with a sharp eye can point it out, i would be very appreciative. import shutil import os import os.path import time import datetime import math import urllib from array import array import random b = 3 #find URL URL = raw_input('Type the URL you would like to read from[Example: http://www.google.com/] :') while b == 3: #get file name file1 = raw_input('Enter a file name for the downloaded code:') filepath = file1 + '.txt' if os.path.isfile(filepath): print 'File already exists' b = 3 else: print 'Filename accepted' b = 4 file_path = filepath #open file FileWrite = open(file_path, 'a') #acces URL filehandle = urllib.urlopen(URL) #display souce code for lines in filehandle.readlines(): FileWrite.write(lines) print lines print 'The above has been saved in both a text and html file' #close files filehandle.close() FileWrite.close()

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  • Processing file uploads before object is saved

    - by Dominic Rodger
    I've got a model like this: class Talk(BaseModel): title = models.CharField(max_length=200) mp3 = models.FileField(upload_to = u'talks/', max_length=200) seconds = models.IntegerField(blank = True, null = True) I want to validate before saving that the uploaded file is an MP3, like this: def is_mp3(path_to_file): from mutagen.mp3 import MP3 audio = MP3(path_to_file) return not audio.info.sketchy Once I'm sure I've got an MP3, I want to save the length of the talk in the seconds attribute, like this: audio = MP3(path_to_file) self.seconds = audio.info.length The problem is, before saving, the uploaded file doesn't have a path (see this ticket, closed as wontfix), so I can't process the MP3. I'd like to raise a nice validation error so that ModelForms can display a helpful error ("You idiot, you didn't upload an MP3" or something). Any idea how I can go about accessing the file before it's saved? p.s. If anyone knows a better way of validating files are MP3s I'm all ears - I also want to be able to mess around with ID3 data (set the artist, album, title and probably album art, so I need it to be processable by mutagen).

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  • Object Literals In Java?

    - by jjacquay712
    I am learning GWT for web development and came across a piece of code I can't really understand. helloBtn.addClickHandler(new ClickHandler() { public void onClick(ClickEvent event) { Window.alert("Hello!"); } }); If someone could explain to me what it is doing that would be great. Thanks, John

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  • Browser Helper Object doesnot get loaded in IE8

    - by velusbits
    I have a BHO, which i can see it as enabled in Add On's list. But it does not get loaded when i start my IE on the Win2k8 R2 machines(64 bit). I have disabled IE Enhanced security as well but no help. The same BHO gets loaded in other machines. The registry details under (HKEY_LOCAL_MACHINE\SOFTWARE\Wow6432Node\Microsoft\Windows\CurrentVersion\Explorer\Browser Helper Objects & HKEY_CLASSES_ROOT\Wow6432Node\CLSID) seem to be fine. Is there any setting that disables BHO from actually getting loaded?

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  • Call function under object from string

    - by sam
    I have a script which creates a drag-and-drop uploader on the page from a div. My DIV will look something like <div class="well uploader" data-type="image" data-callback="product.addimage" data-multi="1"></div> Then I'll have a function something like var product = new function(){ /* Some random stuff */ this.addimage = function(image){ alert('W00T! I HAZ AN IMAGE!'); } /* More random stuff */ } When the upload is complete, I need to call the function in data-callback (In this example, product.addimage). I know with global functions you can just do window[callback]() but I'm not sure the best way to do this with functions under objects. My first thought was to do something like* var obj = window; var parts = callback.split('.'); for(part in parts){ obj = obj[parts[part]]; } obj(); but that seems a bit dirty, is there a better way without using eval because eval is evil? I haven't tested this so I have no idea if it will work

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  • how to implement class with collection of string/object pairs so that an object can be returned with

    - by matti
    The values in a file are read as string and can be double, string or int or maybe even lists. An example file: DatabaseName=SomeBase Classes=11;12;13 IntValue=3 //this is required! DoubleValue=4.0 I was thinking something like this: public static T GetConfigValue(string cfgName) { // here we just return for example the value which could // be List[int] if parameter cfgName='Classes' // and LoadConfig was called with Dictionary containing // keyvaluepair 'Classes' / typeof(List[int]) } public static bool LoadConfig(Dictionary reqSettings, Dictionary optSettings) { foreach (KeyValuePair kvPair in reqSettings) { if (ReadCheckAndStore(kVPair, true)) return false; } foreach (KeyValuePair kvPair in reqSettings) { if (ReadCheckAndStore(kVPair, false)) return false; } return true; } private static bool ReadCheckAndStore(KeyValuePair kVPair, bool isRequired) { if (!ReadValue(kVPair.Key, out confValue) && isRequired) //req. IntValue !found return false; //here also have to test if read value is wanted type. //and if yes store to collection. } Thanks a lot & BR! -Matti PS. Additional issue is default values for optional settings. It's not elegant to pass them to LoadConfig in separate Dictionary, but that is an other issue...

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  • Problem displaying Vertex Buffer Object (OpenGL and Obj-C)

    - by seaworthy
    Hey, I am having a problem displaying or loading a buffer with an array of vertices. I know that array works fine because I am able to render it using a loop and a glVertex command. I can't figure out what's wrong. Your insight is highly appreciated. GLuint vboId; glGenBuffers( 1, &vboId ); glBindBuffer( GL_ARRAY_BUFFER, vboId); glBufferData( GL_ARRAY_BUFFER, count*sizeof( GLfloat ),array,GL_STATIC_DRAW_ARB ); glBindBuffer( GL_ARRAY_BUFFER, 0 ); printf("%d\n",count); glEnableClientState( GL_VERTEX_ARRAY ); glBindBuffer( GL_ARRAY_BUFFER, vboId ); glVertexPointer( 3, GL_FLOAT, 0, 0 ); glDisableClientState( GL_VERTEX_ARRAY ); printf("vboId: [%hd]",vboId); glDeleteBuffers(1, &vboId); Help?

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  • Rotation towards an object in 3d space

    - by retoucher
    hello, i have two coordinates on a 2d plane in 3d space, and am trying to rotate one coordinate (a vector) to face the other coordinate. my vertical axis is the y-axis, so if both of the coordinates are located flat on the 2d plane, they would both have a y-axis of 0, and their x and z coordinates determine their position length/width-wise on the plane. right now, i'm calculating the angle like so (language agnostic): angle = atan2(z2-z1,x2-x1); and am rotating/translating in space like so: pushMatrix(); rotateY(angle); popMatrix(); this doesn't seem to be working though. are my calculations/process correct?

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  • UnknownHostException while redirecting queries to google and getting results in JSon object

    - by shilpa
    Loading classifier from D:\PROJECT\classifiers\NERDemo\classifiers\ner-eng-ie.crf-3-all2008.ser.gz ... done [2.0 sec]. Original Query was riot in India. Parsing Queries and expanding tokens from the Ontologies.. {locations=[India], events=[riot]} Search query is null Something went wrong... java.net.UnknownHostException: ajax.googleapis.com at java.net.PlainSocketImpl.connect(Unknown Source) at java.net.SocksSocketImpl.connect(Unknown Source) at java.net.Socket.connect(Unknown Source) at java.net.Socket.connect(Unknown Source) at sun.net.NetworkClient.doConnect(Unknown Source) at sun.net.www.http.HttpClient.openServer(Unknown Source) at sun.net.www.http.HttpClient.openServer(Unknown Source) at sun.net.www.http.HttpClient.<init>(Unknown Source) at sun.net.www.http.HttpClient.New(Unknown Source) at sun.net.www.http.HttpClient.New(Unknown Source) at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(Unknown Source) at sun.net.www.protocol.http.HttpURLConnection.plainConnect(Unknown Source) at sun.net.www.protocol.http.HttpURLConnection.connect(Unknown Source) at sun.net.www.protocol.http.HttpURLConnection.getInputStream(Unknown Source) at org.girs2.SearchHandler.makeQuery(SearchHandler.java:35) at org.girs2.GIRS.search(GIRS.java:37) at org.girs2.GIRS.main(GIRS.java:62) Exception in thread "main" java.lang.NullPointerException at org.girs2.GIRS.search(GIRS.java:44) at org.girs2.GIRS.main(GIRS.java:62)

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  • bring object to front flash actionscript 3

    - by steve
    I have a menu set up that has about 20 menu items in a circle. When you mouse over each item, a title comes up. The only problem is that because of the depth order, it's hidden behind the other menu items. Is there a way to bring this item to the front when moused over? I'm pretty actionscript illiterate so any help would be awesome.

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  • Difference between KeywordQuery, FullTextQuerySearch type for Object Model and Web service Query

    - by Raghu
    Initially I believed these 3 to be doing more or less the same thing with just the notation being different. Until recently, when i noticed that their does exists a big difference between the results of the KeyWordQuery/FullTextQuerySearch and Web service Query. I used both KeywordQuery and FullText method to search of the the value of a customColumn XYZ with value (ASDSADA-21312ASD-ASDASD):- When I run this query as:- FullTextSqlQuery:- FullTextSqlQuery myQuery = new FullTextSqlQuery(site); { // Construct query text String queryText = "Select title, path, author, isdocument from scope() where freetext('ASDSADA-21312ASD-ASDASD') "; myQuery.QueryText = queryText; myQuery.ResultTypes = ResultType.RelevantResults; }; // execute the query and load the results into a datatable ResultTableCollection queryResults = myQuery.Execute(); ResultTable resultTable = queryResults[ResultType.RelevantResults]; // Load table with results DataTable queryDataTable = new DataTable(); queryDataTable.Load(resultTable, LoadOption.OverwriteChanges); I get the following result representing the document. * Title: TestPDF * path: http://SharepointServer/Shared Documents/Forms/DispForm.aspx?ID=94 * author: null * isDocument: false Do note the Path and isDocument fields of the above result. Web Service Method Then I tried a Web Service Query method. I used Sharepoint Search Service Tool available at http://sharepointsearchserv.codeplex.com/ and ran the same query i.e. Select title, path, author, isdocument from scope() where freetext('ASDSADA-21312ASD-ASDASD'). This time I got the following results:- * Title: TestPDF * path: http://SharepointServer/Shared Documents/TestPDF.pdf * author: null * isDocument: true Again note the path. While the search results from 2nd method are useful as they provide me the file path exactly, I can't seem to understand why is the method 1 not giving me the same results? Why is there a discrepancy between the two results?

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  • Shape object in Processing, translate individual shapes.

    - by Zain
    I am relatively new to Processing but have been working in Java for about 2 years now. I am facing difficulty though with the translate() function for objects as well as objects in general in processing. I went through the examples and tried to replicate the manners by which they instantiated the objects but cannot seem to even get the shapes to appear on the screen no less move them. I instantiate the objects into an array using a nested for loop and expect a grid of the objects to be rendered. However, nothing at all is rendered. My nested for loop structure to instantiate the tiles: for(int i=0; i<102; i++){ for(int j=0; j<102; j++){ tiles[i][j]=new tile(i,0,j); tiles[i][j].display(); } } And the constructors for the tile class: tile(int x, int y, int z){ this.x=x; this.y=y; this.z=z; beginShape(); vertex(x,y,z); vertex(x+1,y,z); vertex(x+1,y,z-1); vertex(x,y,z-1); endShape(); } Nothing is rendered at all when this runs. Furthermore, if this is of any concern, my translations(movements) are done in a method I wrote for the tile class called move which simply calls translate. Is this the correct way? How should one approach this? I can't seem to understand at all how to render/create/translate individual objects/shapes. Thanks for any help any of you are able to provide!

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  • Sort by an object's type

    - by Richard Levasseur
    Hi all, I have code that statically registers (type, handler_function) pairs at module load time, resulting in a dict like this: HANDLERS = { str: HandleStr, int: HandleInt, ParentClass: HandleCustomParent, ChildClass: HandleCustomChild } def HandleObject(obj): for data_type in sorted(HANDLERS.keys(), ???): if isinstance(obj, data_type): HANDLERS[data_type](obj) Where ChildClass inherits from ParentClass. The problem is that, since its a dict, the order isn't defined - but how do I introspect type objects to figure out a sort key? The resulting order should be child classes follow by super classes (most specific types first). E.g. str comes before basestring, and ChildClass comes before ParentClass. If types are unrelated, it doesn't matter where they go relative to each other.

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  • Guaranteed COM object release?

    - by Jurily
    I wrote the following code under the assumption that Excel will die with Monkey: class ExcelMonkey { private static Excel.Application xl = new Excel.Application(); public static bool parse(string filename) { if (filename.Contains("foo")) { var workbook = xl.Workbooks.Open(filename); var sheet = workbook.Worksheets.get_Item(1); // do stuff return true; } return false; } } How do I make sure it does? Do I need to release workbook and sheet separately? I want to have Excel around for the lifetime of the program, it's a huge performance improvement.

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