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  • R how to find NA values after using addNA function

    - by screechOwl
    I have a data frame with a bunch of categorical variables. Some of them contain NA's and I use the addNA function to convert them to an explicit factor level. My problem comes when I try to treat them as NA's they don't seem to register. Here's my example data set and attempts to 'find' NA's: df1 <- data.frame(id = 1:200, y =rbinom(200, 1, .5), var1 = factor(rep(c('abc','def','ghi','jkl'),50))) df1$var2 <- factor(rep(c('ab c','ghi','jkl','def'),50)) df1$var3 <- factor(rep(c('abc','ghi','nop','xyz'),50)) df1[df1$var1 == 'abc','var1'] <- NA df1$var1 <- addNA(df1$var1) df1$isNaCol <- ifelse(df1$var1 == NA, 1, 0);summary(df1$isNaCol) df1$isNaCol <- ifelse(is.na(df1$var1), 1, 0);summary(df1$isNaCol) df1$isNaCol <- ifelse(df1$var1 == 'NA', 1, 0);summary(df1$isNaCol) df1$isNaCol <- ifelse(df1$var1 == '<NA>', 1, 0);summary(df1$isNaCol) Also when I type ??addNA I don't get any matches. Is this a gray-market function or something? Any suggestions would be appreciated.

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  • replace NA in an R vector with adjacent values

    - by pssguy
    I have a dataframe which has merged player and team data for soccer seasons So for a particular player in a specific season I have data like df <- data.frame(team=c(NA,"CRP",NA,"CRP","CRP",NA), player=c(NA,"Ed",NA,"Ed","Ed",NA), playerGame= c(NA,1,NA,2,3,NA), teamGame =c(1,2,3,4,5,6)) Where the NA's indicate that the player did not appear in that specific team game How would I most efficiently replace the team and player NA's with "CRP" and "Ed" respectively and have a plGame output of, in this instance, 0,1,1,2,3,3

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  • Best way to reduce consecutive NAs to single NA

    - by digEmAll
    I need to reduce the consecutive NA's in a vector to a single NA, without touching the other values. So, for example, given a vector like this: NA NA 8 7 NA NA NA NA NA 3 3 NA -1 4 what I need to get, is the following result: NA 8 7 NA 3 3 NA -1 4 Currently, I'm using the following function: reduceConsecutiveNA2One <- function(vect){ enc <- rle(is.na(vect)) # helper func tmpFun <- function(i){ if(enc$values[i]){ data.frame(L=c(enc$lengths[i]-1, 1), V=c(TRUE,FALSE)) }else{ data.frame(L=enc$lengths[i], V=enc$values[i]) } } Df <- do.call(rbind.data.frame,lapply(1:length(enc$lengths),FUN=tmpFun)) return(vect[rep.int(!Df$V,Df$L)]) } and it seems to work fine, but probably there's a simpler/faster way to accomplish this task. Any suggestions ? Thanks in advance.

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  • subset in geom_point SOMETIMES returns full dataset, instead of none.

    - by Andreas
    I ask the following in the hope that someone might come up with a generic description about the problem.Basically I have no idea whats wrong with my code. When I run the code below, plot nr. 8 turns out wrong. Specifically the subset in geom_point does not work the way it should. (update: With plot nr. 8 the whole dataset is plottet, instead of only the subset). If somebody can tell me what the problem is, I'll update this post. SOdata <- structure(list(id = 10:55, one = c(7L, 8L, 7L, NA, 7L, 8L, 5L, 7L, 7L, 8L, NA, 10L, 8L, NA, NA, NA, NA, 6L, 5L, 6L, 8L, 4L, 7L, 6L, 9L, 7L, 5L, 6L, 7L, 6L, 5L, 8L, 8L, 7L, 7L, 6L, 6L, 8L, 6L, 8L, 8L, 7L, 7L, 5L, 5L, 8L), two = c(7L, NA, 8L, NA, 10L, 10L, 8L, 9L, 4L, 10L, NA, 10L, 9L, NA, NA, NA, NA, 7L, 8L, 9L, 10L, 9L, 8L, 8L, 8L, 8L, 8L, 9L, 10L, 8L, 8L, 8L, 10L, 9L, 10L, 8L, 9L, 10L, 8L, 8L, 7L, 10L, 8L, 9L, 7L, 9L), three = c(7L, 10L, 7L, NA, 10L, 10L, NA, 10L, NA, NA, NA, NA, 10L, NA, NA, 4L, NA, 7L, 7L, 4L, 10L, 10L, 7L, 4L, 7L, NA, 10L, 4L, 7L, 7L, 7L, 10L, 10L, 7L, 10L, 4L, 10L, 10L, 10L, 4L, 10L, 10L, 10L, 10L, 7L, 10L), four = c(7L, 10L, 4L, NA, 10L, 7L, NA, 7L, NA, NA, NA, NA, 10L, NA, NA, 4L, NA, 10L, 10L, 7L, 10L, 10L, 7L, 7L, 7L, NA, 10L, 7L, 4L, 10L, 4L, 7L, 10L, 2L, 10L, 4L, 12L, 4L, 7L, 10L, 10L, 12L, 12L, 4L, 7L, 10L), five = c(7L, NA, 6L, NA, 8L, 8L, 7L, NA, 9L, NA, NA, NA, 9L, NA, NA, NA, NA, 7L, 8L, NA, NA, 7L, 7L, 4L, NA, NA, NA, NA, 5L, 6L, 5L, 7L, 7L, 6L, 9L, NA, 10L, 7L, 8L, 5L, 7L, 10L, 7L, 4L, 5L, 10L), six = structure(c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L), .Label = c("2010-05-25", "2010-05-27", "2010-06-07"), class = "factor"), seven = c(0.777777777777778, 0.833333333333333, 0.333333333333333, 0.888888888888889, 0.5, 0.888888888888889, 0.777777777777778, 0.722222222222222, 0.277777777777778, 0.611111111111111, 0.722222222222222, 1, 0.888888888888889, 0.722222222222222, 0.555555555555556, NA, 0, 0.666666666666667, 0.666666666666667, 0.833333333333333, 0.833333333333333, 0.833333333333333, 0.833333333333333, 0.722222222222222, 0.833333333333333, 0.888888888888889, 0.666666666666667, 1, 0.777777777777778, 0.722222222222222, 0.5, 0.833333333333333, 0.722222222222222, 0.388888888888889, 0.722222222222222, 1, 0.611111111111111, 0.777777777777778, 0.722222222222222, 0.944444444444444, 0.555555555555556, 0.666666666666667, 0.722222222222222, 0.444444444444444, 0.333333333333333, 0.777777777777778), eight = c(0.666666666666667, 0.333333333333333, 0.833333333333333, 0.666666666666667, 1, 1, 0.833333333333333, 0.166666666666667, 0.833333333333333, 0.833333333333333, 1, 1, 0.666666666666667, 0.666666666666667, 0.333333333333333, 0.5, 0, 0.666666666666667, 0.5, 1, 0.666666666666667, 0.5, 0.666666666666667, 0.666666666666667, 0.666666666666667, 0.333333333333333, 0.333333333333333, 1, 0.666666666666667, 0.833333333333333, 0.666666666666667, 0.666666666666667, 0.5, 0, 0.833333333333333, 1, 0.666666666666667, 0.5, 0.666666666666667, 0.666666666666667, 0.5, 1, 0.833333333333333, 0.666666666666667, 0.833333333333333, 0.666666666666667), nine = c(0.307692307692308, NA, 0.461538461538462, 0.538461538461538, 1, 0.769230769230769, 0.538461538461538, 0.692307692307692, 0, 0.153846153846154, 0.769230769230769, NA, 0.461538461538462, NA, NA, NA, NA, 0, 0.615384615384615, 0.615384615384615, 0.769230769230769, 0.384615384615385, 0.846153846153846, 0.923076923076923, 0.615384615384615, 0.692307692307692, 0.0769230769230769, 0.846153846153846, 0.384615384615385, 0.384615384615385, 0.461538461538462, 0.384615384615385, 0.461538461538462, NA, 0.923076923076923, 0.692307692307692, 0.615384615384615, 0.615384615384615, 0.769230769230769, 0.0769230769230769, 0.230769230769231, 0.692307692307692, 0.769230769230769, 0.230769230769231, 0.769230769230769, 0.615384615384615), ten = c(0.875, 0.625, 0.375, 0.75, 0.75, 0.75, 0.625, 0.875, 1, 0.125, 1, NA, 0.625, 0.75, 0.75, 0.375, NA, 0.625, 0.5, 0.75, 0.875, 0.625, 0.875, 0.75, 0.625, 0.875, 0.5, 0.75, 0, 0.5, 0.875, 1, 0.75, 0.125, 0.5, 0.5, 0.5, 0.625, 0.375, 0.625, 0.625, 0.75, 0.875, 0.375, 0, 0.875), elleven = c(1, 0.8, 0.7, 0.9, 0, 1, 0.9, 0.5, 0, 0.8, 0.8, NA, 0.8, NA, NA, 0.8, NA, 0.4, 0.8, 0.5, 1, 0.4, 0.5, 0.9, 0.8, 1, 0.8, 0.5, 0.3, 0.9, 0.2, 1, 0.8, 0.1, 1, 0.8, 0.5, 0.2, 0.7, 0.8, 1, 0.9, 0.6, 0.8, 0.2, 1), twelve = c(0.666666666666667, NA, 0.133333333333333, 1, 1, 0.8, 0.4, 0.733333333333333, NA, 0.933333333333333, NA, NA, 0.6, 0.533333333333333, NA, 0.533333333333333, NA, 0, 0.6, 0.533333333333333, 0.733333333333333, 0.6, 0.733333333333333, 0.666666666666667, 0.533333333333333, 0.733333333333333, 0.466666666666667, 0.733333333333333, 1, 0.733333333333333, 0.666666666666667, 0.533333333333333, NA, 0.533333333333333, 0.6, 0.866666666666667, 0.466666666666667, 0.533333333333333, 0.333333333333333, 0.6, 0.6, 0.866666666666667, 0.666666666666667, 0.6, 0.6, 0.533333333333333)), .Names = c("id", "one", "two", "three", "four", "five", "six", "seven", "eight", "nine", "ten", "elleven", "twelve"), class = "data.frame", row.names = c(NA, -46L)) iqr <- function(x, ...) { qs <- quantile(as.numeric(x), c(0.25, 0.5, 0.75), na.rm = T) names(qs) <- c("ymin", "y", "ymax") qs } magic <- function(y, ...) { high <- median(SOdata[[y]], na.rm=T)+1.5*sd(SOdata[[y]],na.rm=T) low <- median(SOdata[[y]], na.rm=T)-1.5*sd(SOdata[[y]],na.rm=T) ggplot(SOdata, aes_string(x="six", y=y))+ stat_summary(fun.data="iqr", geom="crossbar", fill="grey", alpha=0.3)+ geom_point(data = SOdata[SOdata[[y]] > high,], position=position_jitter(w=0.1, h=0),col="green", alpha=0.5)+ geom_point(data = SOdata[SOdata[[y]] < low,], position=position_jitter(w=0.1, h=0),col="red", alpha=0.5)+ stat_summary(fun.y=median, geom="point",shape=18 ,size=4, col="orange") } for (i in names(SOdata)[-c(1,7)]) { p<- magic(i) ggsave(paste("magig_plot_",i,".png",sep=""), plot=p, height=3.5, width=5.5) }

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  • how to use ggplot conditional on data

    - by Andreas
    I asked this question and it seams ggplot2 currently has a bug with empty data.frames. Therefore I am trying to check if the dataframe is empty, before I make the plot. But what ever I come up with, it gets really ugly, and doesn't work. So I am asking for your help. example data: SOdata <- structure(list(id = 10:55, one = c(7L, 8L, 7L, NA, 7L, 8L, 5L, 7L, 7L, 8L, NA, 10L, 8L, NA, NA, NA, NA, 6L, 5L, 6L, 8L, 4L, 7L, 6L, 9L, 7L, 5L, 6L, 7L, 6L, 5L, 8L, 8L, 7L, 7L, 6L, 6L, 8L, 6L, 8L, 8L, 7L, 7L, 5L, 5L, 8L), two = c(7L, NA, 8L, NA, 10L, 10L, 8L, 9L, 4L, 10L, NA, 10L, 9L, NA, NA, NA, NA, 7L, 8L, 9L, 10L, 9L, 8L, 8L, 8L, 8L, 8L, 9L, 10L, 8L, 8L, 8L, 10L, 9L, 10L, 8L, 9L, 10L, 8L, 8L, 7L, 10L, 8L, 9L, 7L, 9L), three = c(7L, 10L, 7L, NA, 10L, 10L, NA, 10L, NA, NA, NA, NA, 10L, NA, NA, 4L, NA, 7L, 7L, 4L, 10L, 10L, 7L, 4L, 7L, NA, 10L, 4L, 7L, 7L, 7L, 10L, 10L, 7L, 10L, 4L, 10L, 10L, 10L, 4L, 10L, 10L, 10L, 10L, 7L, 10L), four = c(7L, 10L, 4L, NA, 10L, 7L, NA, 7L, NA, NA, NA, NA, 10L, NA, NA, 4L, NA, 10L, 10L, 7L, 10L, 10L, 7L, 7L, 7L, NA, 10L, 7L, 4L, 10L, 4L, 7L, 10L, 2L, 10L, 4L, 12L, 4L, 7L, 10L, 10L, 12L, 12L, 4L, 7L, 10L), five = c(7L, NA, 6L, NA, 8L, 8L, 7L, NA, 9L, NA, NA, NA, 9L, NA, NA, NA, NA, 7L, 8L, NA, NA, 7L, 7L, 4L, NA, NA, NA, NA, 5L, 6L, 5L, 7L, 7L, 6L, 9L, NA, 10L, 7L, 8L, 5L, 7L, 10L, 7L, 4L, 5L, 10L), six = structure(c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L), .Label = c("2010-05-25", "2010-05-27", "2010-06-07"), class = "factor"), seven = c(0.777777777777778, 0.833333333333333, 0.333333333333333, 0.888888888888889, 0.5, 0.888888888888889, 0.777777777777778, 0.722222222222222, 0.277777777777778, 0.611111111111111, 0.722222222222222, 1, 0.888888888888889, 0.722222222222222, 0.555555555555556, NA, 0, 0.666666666666667, 0.666666666666667, 0.833333333333333, 0.833333333333333, 0.833333333333333, 0.833333333333333, 0.722222222222222, 0.833333333333333, 0.888888888888889, 0.666666666666667, 1, 0.777777777777778, 0.722222222222222, 0.5, 0.833333333333333, 0.722222222222222, 0.388888888888889, 0.722222222222222, 1, 0.611111111111111, 0.777777777777778, 0.722222222222222, 0.944444444444444, 0.555555555555556, 0.666666666666667, 0.722222222222222, 0.444444444444444, 0.333333333333333, 0.777777777777778), eight = c(0.666666666666667, 0.333333333333333, 0.833333333333333, 0.666666666666667, 1, 1, 0.833333333333333, 0.166666666666667, 0.833333333333333, 0.833333333333333, 1, 1, 0.666666666666667, 0.666666666666667, 0.333333333333333, 0.5, 0, 0.666666666666667, 0.5, 1, 0.666666666666667, 0.5, 0.666666666666667, 0.666666666666667, 0.666666666666667, 0.333333333333333, 0.333333333333333, 1, 0.666666666666667, 0.833333333333333, 0.666666666666667, 0.666666666666667, 0.5, 0, 0.833333333333333, 1, 0.666666666666667, 0.5, 0.666666666666667, 0.666666666666667, 0.5, 1, 0.833333333333333, 0.666666666666667, 0.833333333333333, 0.666666666666667), nine = c(0.307692307692308, NA, 0.461538461538462, 0.538461538461538, 1, 0.769230769230769, 0.538461538461538, 0.692307692307692, 0, 0.153846153846154, 0.769230769230769, NA, 0.461538461538462, NA, NA, NA, NA, 0, 0.615384615384615, 0.615384615384615, 0.769230769230769, 0.384615384615385, 0.846153846153846, 0.923076923076923, 0.615384615384615, 0.692307692307692, 0.0769230769230769, 0.846153846153846, 0.384615384615385, 0.384615384615385, 0.461538461538462, 0.384615384615385, 0.461538461538462, NA, 0.923076923076923, 0.692307692307692, 0.615384615384615, 0.615384615384615, 0.769230769230769, 0.0769230769230769, 0.230769230769231, 0.692307692307692, 0.769230769230769, 0.230769230769231, 0.769230769230769, 0.615384615384615), ten = c(0.875, 0.625, 0.375, 0.75, 0.75, 0.75, 0.625, 0.875, 1, 0.125, 1, NA, 0.625, 0.75, 0.75, 0.375, NA, 0.625, 0.5, 0.75, 0.875, 0.625, 0.875, 0.75, 0.625, 0.875, 0.5, 0.75, 0, 0.5, 0.875, 1, 0.75, 0.125, 0.5, 0.5, 0.5, 0.625, 0.375, 0.625, 0.625, 0.75, 0.875, 0.375, 0, 0.875), elleven = c(1, 0.8, 0.7, 0.9, 0, 1, 0.9, 0.5, 0, 0.8, 0.8, NA, 0.8, NA, NA, 0.8, NA, 0.4, 0.8, 0.5, 1, 0.4, 0.5, 0.9, 0.8, 1, 0.8, 0.5, 0.3, 0.9, 0.2, 1, 0.8, 0.1, 1, 0.8, 0.5, 0.2, 0.7, 0.8, 1, 0.9, 0.6, 0.8, 0.2, 1), twelve = c(0.666666666666667, NA, 0.133333333333333, 1, 1, 0.8, 0.4, 0.733333333333333, NA, 0.933333333333333, NA, NA, 0.6, 0.533333333333333, NA, 0.533333333333333, NA, 0, 0.6, 0.533333333333333, 0.733333333333333, 0.6, 0.733333333333333, 0.666666666666667, 0.533333333333333, 0.733333333333333, 0.466666666666667, 0.733333333333333, 1, 0.733333333333333, 0.666666666666667, 0.533333333333333, NA, 0.533333333333333, 0.6, 0.866666666666667, 0.466666666666667, 0.533333333333333, 0.333333333333333, 0.6, 0.6, 0.866666666666667, 0.666666666666667, 0.6, 0.6, 0.533333333333333)), .Names = c("id", "one", "two", "three", "four", "five", "six", "seven", "eight", "nine", "ten", "elleven", "twelve"), class = "data.frame", row.names = c(NA, -46L)) And the plot iqr <- function(x, ...) { qs <- quantile(as.numeric(x), c(0.25, 0.5, 0.75), na.rm = T) names(qs) <- c("ymin", "y", "ymax") qs } magic <- function(y, ...) { high <- median(SOdata[[y]], na.rm=T)+1.5*sd(SOdata[[y]],na.rm=T) low <- median(SOdata[[y]], na.rm=T)-1.5*sd(SOdata[[y]],na.rm=T) ggplot(SOdata, aes_string(x="six", y=y))+ stat_summary(fun.data="iqr", geom="crossbar", fill="grey", alpha=0.3)+ geom_point(data = SOdata[SOdata[[y]] > high,], position=position_jitter(w=0.1, h=0),col="green", alpha=0.5)+ geom_point(data = SOdata[SOdata[[y]] < low,], position=position_jitter(w=0.1, h=0),col="red", alpha=0.5)+ stat_summary(fun.y=median, geom="point",shape=18 ,size=4, col="orange") } for (i in names(SOdata)[-c(1,7)]) { p<- magic(i) ggsave(paste("magig_plot_",i,".png",sep=""), plot=p, height=3.5, width=5.5) } The problem is that sometimes in the call to geom_point the subset returns an empty dataframe, which sometimes (!) causes ggplot2 to plot all the data instead of none of the data. geom_point(data = SOdata[SOdata[[y]] > high,], position=position_jitter(w=0.1, h=0),col="green", alpha=0.5)+ This is kindda of important to me, and I am really stuck trying to find a solution. Any help that will get me started is much appreciated. Thanks in advance.

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  • What is wrong here (will update): subset in geom_point does not work as expected

    - by Andreas
    I ask the following in the hope that someone might come up with a generic description about the problem.Basically I have no idea whats wrong with my code. When I run the code below, plot nr. 8 turns out wrong. Specifically the subset in geom_point does not work the way it should. If somebody can tell me what the problem is, I'll update this post. SOdata <- structure(list(id = 10:55, one = c(7L, 8L, 7L, NA, 7L, 8L, 5L, 7L, 7L, 8L, NA, 10L, 8L, NA, NA, NA, NA, 6L, 5L, 6L, 8L, 4L, 7L, 6L, 9L, 7L, 5L, 6L, 7L, 6L, 5L, 8L, 8L, 7L, 7L, 6L, 6L, 8L, 6L, 8L, 8L, 7L, 7L, 5L, 5L, 8L), two = c(7L, NA, 8L, NA, 10L, 10L, 8L, 9L, 4L, 10L, NA, 10L, 9L, NA, NA, NA, NA, 7L, 8L, 9L, 10L, 9L, 8L, 8L, 8L, 8L, 8L, 9L, 10L, 8L, 8L, 8L, 10L, 9L, 10L, 8L, 9L, 10L, 8L, 8L, 7L, 10L, 8L, 9L, 7L, 9L), three = c(7L, 10L, 7L, NA, 10L, 10L, NA, 10L, NA, NA, NA, NA, 10L, NA, NA, 4L, NA, 7L, 7L, 4L, 10L, 10L, 7L, 4L, 7L, NA, 10L, 4L, 7L, 7L, 7L, 10L, 10L, 7L, 10L, 4L, 10L, 10L, 10L, 4L, 10L, 10L, 10L, 10L, 7L, 10L), four = c(7L, 10L, 4L, NA, 10L, 7L, NA, 7L, NA, NA, NA, NA, 10L, NA, NA, 4L, NA, 10L, 10L, 7L, 10L, 10L, 7L, 7L, 7L, NA, 10L, 7L, 4L, 10L, 4L, 7L, 10L, 2L, 10L, 4L, 12L, 4L, 7L, 10L, 10L, 12L, 12L, 4L, 7L, 10L), five = c(7L, NA, 6L, NA, 8L, 8L, 7L, NA, 9L, NA, NA, NA, 9L, NA, NA, NA, NA, 7L, 8L, NA, NA, 7L, 7L, 4L, NA, NA, NA, NA, 5L, 6L, 5L, 7L, 7L, 6L, 9L, NA, 10L, 7L, 8L, 5L, 7L, 10L, 7L, 4L, 5L, 10L), six = structure(c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L), .Label = c("2010-05-25", "2010-05-27", "2010-06-07"), class = "factor"), seven = c(0.777777777777778, 0.833333333333333, 0.333333333333333, 0.888888888888889, 0.5, 0.888888888888889, 0.777777777777778, 0.722222222222222, 0.277777777777778, 0.611111111111111, 0.722222222222222, 1, 0.888888888888889, 0.722222222222222, 0.555555555555556, NA, 0, 0.666666666666667, 0.666666666666667, 0.833333333333333, 0.833333333333333, 0.833333333333333, 0.833333333333333, 0.722222222222222, 0.833333333333333, 0.888888888888889, 0.666666666666667, 1, 0.777777777777778, 0.722222222222222, 0.5, 0.833333333333333, 0.722222222222222, 0.388888888888889, 0.722222222222222, 1, 0.611111111111111, 0.777777777777778, 0.722222222222222, 0.944444444444444, 0.555555555555556, 0.666666666666667, 0.722222222222222, 0.444444444444444, 0.333333333333333, 0.777777777777778), eight = c(0.666666666666667, 0.333333333333333, 0.833333333333333, 0.666666666666667, 1, 1, 0.833333333333333, 0.166666666666667, 0.833333333333333, 0.833333333333333, 1, 1, 0.666666666666667, 0.666666666666667, 0.333333333333333, 0.5, 0, 0.666666666666667, 0.5, 1, 0.666666666666667, 0.5, 0.666666666666667, 0.666666666666667, 0.666666666666667, 0.333333333333333, 0.333333333333333, 1, 0.666666666666667, 0.833333333333333, 0.666666666666667, 0.666666666666667, 0.5, 0, 0.833333333333333, 1, 0.666666666666667, 0.5, 0.666666666666667, 0.666666666666667, 0.5, 1, 0.833333333333333, 0.666666666666667, 0.833333333333333, 0.666666666666667), nine = c(0.307692307692308, NA, 0.461538461538462, 0.538461538461538, 1, 0.769230769230769, 0.538461538461538, 0.692307692307692, 0, 0.153846153846154, 0.769230769230769, NA, 0.461538461538462, NA, NA, NA, NA, 0, 0.615384615384615, 0.615384615384615, 0.769230769230769, 0.384615384615385, 0.846153846153846, 0.923076923076923, 0.615384615384615, 0.692307692307692, 0.0769230769230769, 0.846153846153846, 0.384615384615385, 0.384615384615385, 0.461538461538462, 0.384615384615385, 0.461538461538462, NA, 0.923076923076923, 0.692307692307692, 0.615384615384615, 0.615384615384615, 0.769230769230769, 0.0769230769230769, 0.230769230769231, 0.692307692307692, 0.769230769230769, 0.230769230769231, 0.769230769230769, 0.615384615384615), ten = c(0.875, 0.625, 0.375, 0.75, 0.75, 0.75, 0.625, 0.875, 1, 0.125, 1, NA, 0.625, 0.75, 0.75, 0.375, NA, 0.625, 0.5, 0.75, 0.875, 0.625, 0.875, 0.75, 0.625, 0.875, 0.5, 0.75, 0, 0.5, 0.875, 1, 0.75, 0.125, 0.5, 0.5, 0.5, 0.625, 0.375, 0.625, 0.625, 0.75, 0.875, 0.375, 0, 0.875), elleven = c(1, 0.8, 0.7, 0.9, 0, 1, 0.9, 0.5, 0, 0.8, 0.8, NA, 0.8, NA, NA, 0.8, NA, 0.4, 0.8, 0.5, 1, 0.4, 0.5, 0.9, 0.8, 1, 0.8, 0.5, 0.3, 0.9, 0.2, 1, 0.8, 0.1, 1, 0.8, 0.5, 0.2, 0.7, 0.8, 1, 0.9, 0.6, 0.8, 0.2, 1), twelve = c(0.666666666666667, NA, 0.133333333333333, 1, 1, 0.8, 0.4, 0.733333333333333, NA, 0.933333333333333, NA, NA, 0.6, 0.533333333333333, NA, 0.533333333333333, NA, 0, 0.6, 0.533333333333333, 0.733333333333333, 0.6, 0.733333333333333, 0.666666666666667, 0.533333333333333, 0.733333333333333, 0.466666666666667, 0.733333333333333, 1, 0.733333333333333, 0.666666666666667, 0.533333333333333, NA, 0.533333333333333, 0.6, 0.866666666666667, 0.466666666666667, 0.533333333333333, 0.333333333333333, 0.6, 0.6, 0.866666666666667, 0.666666666666667, 0.6, 0.6, 0.533333333333333)), .Names = c("id", "one", "two", "three", "four", "five", "six", "seven", "eight", "nine", "ten", "elleven", "twelve"), class = "data.frame", row.names = c(NA, -46L)) iqr <- function(x, ...) { qs <- quantile(as.numeric(x), c(0.25, 0.5, 0.75), na.rm = T) names(qs) <- c("ymin", "y", "ymax") qs } magic <- function(y, ...) { high <- median(SOdata[[y]], na.rm=T)+1.5*sd(SOdata[[y]],na.rm=T) low <- median(SOdata[[y]], na.rm=T)-1.5*sd(SOdata[[y]],na.rm=T) ggplot(SOdata, aes_string(x="six", y=y))+ stat_summary(fun.data="iqr", geom="crossbar", fill="grey", alpha=0.3)+ geom_point(data = SOdata[SOdata[[y]] > high,], position=position_jitter(w=0.1, h=0),col="green", alpha=0.5)+ geom_point(data = SOdata[SOdata[[y]] < low,], position=position_jitter(w=0.1, h=0),col="red", alpha=0.5)+ stat_summary(fun.y=median, geom="point",shape=18 ,size=4, col="orange") } for (i in names(SOdata)[-c(1,7)]) { p<- magic(i) ggsave(paste("magig_plot_",i,".png",sep=""), plot=p, height=3.5, width=5.5) }

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  • geom_ribbon doesn't work - Error in eval(expr, envir, enclos) : object 'variable' not found

    - by Marciszka
    I try to add a geom_ribbon object to my ggplot2 plot. In my data frame, I have an NA values that (I guess) may cause a problem. This is a reproducible example of data drame I have: base <- c(1:10, rep(NA, 10)) output1 <- c(rep(NA, 9), 10 - 0:10) output2 <- c(rep(NA, 9), 10 + 0:10) xaxis <- 1:20 df <- data.frame(xaxis, base, output1, output2) df xaxis base output1 output2 1 1 1 NA NA 2 2 2 NA NA 3 3 3 NA NA 4 4 4 NA NA 5 5 5 NA NA 6 6 6 NA NA 7 7 7 NA NA 8 8 8 NA NA 9 9 9 NA NA 10 10 10 10 10 11 11 NA 9 11 12 12 NA 8 12 13 13 NA 7 13 14 14 NA 6 14 15 15 NA 5 15 16 16 NA 4 16 17 17 NA 3 17 18 18 NA 2 18 19 19 NA 1 19 20 20 NA 0 20 And my attempt to plot a ggplot2 object with a geom_ribbon: dfm <- melt(df, id=1) ggplot(dfm, aes(x = xaxis, y = value, colour = variable)) + geom_line(aes(group=variable)) + geom_ribbon(data=df, aes(group = 1, ymin=output1, ymax=output2)) And, eventually, I got an error I cannot deal with: Error in eval(expr, envir, enclos) : object 'variable' not found Thank ypu in advance for any suggestions.

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  • Create lags with a for-loop in R

    - by cptn
    I've got a data.frame with stock data of several companies (here it's only two). I want 10 additional columns in my stock data.frame df with lagged dates (from -5 days to +5 days) for both companies in my event data.frame. I'm using a for loop which is probably not the best solution, but it works partially. DATE <- c("01.01.2000","02.01.2000","03.01.2000","06.01.2000","07.01.2000","09.01.2000","10.01.2000","01.01.2000","02.01.2000","04.01.2000","06.01.2000","07.01.2000","09.01.2000","10.01.2000") RET <- c(-2.0,1.1,3,1.4,-0.2, 0.6, 0.1, -0.21, -1.2, 0.9, 0.3, -0.1,0.3,-0.12) COMP <- c("A","A","A","A","A","A","A","B","B","B","B","B","B","B") df <- data.frame(DATE, RET, COMP, stringsAsFactors=F) df # DATE RET COMP # 1 01.01.2000 -2.00 A # 2 02.01.2000 1.10 A # 3 03.01.2000 3.00 A # 4 06.01.2000 1.40 A # 5 07.01.2000 -0.20 A # 6 09.01.2000 0.60 A # 7 10.01.2000 0.10 A # 8 01.01.2000 -0.21 B # 9 02.01.2000 -1.20 B # 10 04.01.2000 0.90 B # 11 06.01.2000 0.30 B # 12 07.01.2000 -0.10 B # 13 09.01.2000 0.30 B # 14 10.01.2000 -0.12 B this loop works fine comp <- as.vector(unique(df$COMP)) mylist <- vector('list', length(comp)) # create lags in DATE for(i in 1:length(comp)) { print(i) comp_i <- comp[i] df_k <- df[df$COMP %in% comp_i, ] # all trading days of one firm df_k <- transform(df_k, DATEm1 = c(NA, head(DATE, -1)), DATEm2 = c(NA, NA, head(DATE, -2)), DATEm3 = c(NA, NA, NA, head(DATE, -3)), DATEm4 = c(NA, NA, NA, NA,head(DATE, -4)), DATEm5 = c(NA, NA, NA, NA, NA, head(DATE, -5)), DATEp1 = c(DATE[-1], NA)) #DATEp2 = c(DATE[-2], NA, NA), #DATEp3 = c(DATE[-3], NA, NA, NA), #DATEp4 = c(DATE[-4], NA, NA, NA, NA), #DATEp5 = c(DATE[-5], NA, NA, NA, NA, NA)) mylist[[i]] = df_k } df1 <- do.call(rbind, mylist) But if I add the lines with DATEp2, DATEp3, DATEp4, DATEp5. the code doesn't work. Can anybody tell me what I'm doing wrong here? Here the code with all the lagged dates. # create lags in DATE for(i in 1:length(comp)) { print(i) comp_i <- comp[i] df_k <- df[df$COMP %in% comp_i, ] # all trading days of one firm df_k <- transform(df_k, DATEm1 = c(NA, head(DATE, -1)), DATEm2 = c(NA, NA, head(DATE, -2)), DATEm3 = c(NA, NA, NA, head(DATE, -3)), DATEm4 = c(NA, NA, NA, NA,head(DATE, -4)), DATEm5 = c(NA, NA, NA, NA, NA, head(DATE, -5)), DATEp1 = c(DATE[-1], NA), DATEp2 = c(DATE[-2], NA, NA), DATEp3 = c(DATE[-3], NA, NA, NA), DATEp4 = c(DATE[-4], NA, NA, NA, NA), DATEp5 = c(DATE[-5], NA, NA, NA, NA, NA)) mylist[[i]] = df_k } df1 <- do.call(rbind, mylist)

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  • Oracle Database 11gR2 už i na Windows

    - by david.krch
    Na konci týdne byla na OTN uvedena verze Oracle Database 11g Release 2 pro Windows - jak 32-bit, tak i 64-bit. Doplnila tak již dríve dostupné verze pro Linux, Solaris (jak na SPARC, tak i x86), AIX a HP-UX. Jako obvykle je možné stahnout instalacní soubory na všechny tyto platformy z OTN.

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  • Replace values in a dataframe based on another factor which contains NA's in R

    - by PaulHurleyuk
    I have a dataframe which contains (among other things) a numeric column with a concentration, and a factor column with a status flag. This status flag contains NA's. Here's an example df<-structure(list(conc = c(101.769, 1.734, 62.944, 92.697, 25.091, 27.377, 24.343, 55.084, 0.335, 23.280), status = structure(c(NA, NA, NA, NA, NA, NA, 2L, NA, 1L, NA), .Label = c("<LLOQ", "NR"), class = "factor")), .Names = c("conc", "status"), row.names = c(NA, -10L), class = "data.frame") I want to replace the concentration column with a string for some values of the flag column, or with the concentration value formatted to a certain number of significant digits. When I try this ifelse(df$status=="NR","NR",df$conc) The NA's in the status flag don't trigger either the true or false condition (and return NA) - as the documentation suggests it will. I could loop over the rows and use IF then else on each one but this seems inefficient. Am I missing something ? I've tried as.character(df$status) as well which doesn't work. My mojo must be getting low....

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  • R : remove columns from dataframe where ALL values are NA

    - by Sophomore
    hello everybody! I'm having some trouble with my huge data frame and couldn't really resolve that question myself: The dataframe has some properties as columns and each row represents one data set. I've done some sanatizing to this dataframe (e.g. get rid of datasets which are not to be included in evaluation). (Whoever might be interested: Beforehand I aggregate around 5000 single text files and put them in a tsv, some of the proerties have a sequence number like "button.pressed.1" ... ""button.pressed.n". Some of the sets excluded had really high numbers for n but got excluded, all sets left have much smaller numbers for n but the property "button.presed.50" is still there and all remaining sets have an NA in that column. Actually its a different property but the example should clarify my intention...) So the question is quite simple (for some sophisticated R pro): I need to get rid of columns where for ALL rows the value is NA. Could someone please help me out? (All I have managed to get rid of columns where at least one NA exists which dropped about half my columns)...

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  • R: NA/NaN/Inf in foreign function call (arg 1)

    - by Ma Changchen
    When i use a package named HydroMe to fit a model, some data groups will return the following errors: Error in qr.default(.swts * attr(rhs, "gradient")) : NA/NaN/Inf in foreign function call (arg 1) Actually,there is no missing value in the data groups. the codes are as followed: library(HydroMe) fortst<-read.csv(file="F:/fortst.csv") van.lis <-nlsList(y~SSvan(x,Thr, Ths, alp, scal)|Sample,data=fortst) datas are as following: Sample x y 1116 0.000001 0.4003 1116 10 0.3402 1116 20 0.3439 1116 30 0.3432 1116 40 0.3426 1116 60 0.3379 1116 90 0.3325 1116 180 0.3212 1116 405 0.3033 1116 810 0.2843 1116 1630 0.2659 1117 0.000001 0.3785 1117 10 0.3173 1117 20 0.3199 1117 30 0.3193 1117 40 0.3179 1117 60 0.313 1117 90 0.308 1117 180 0.2973 1117 405 0.2789 1117 810 0.2608 1117 1630 0.2405 the example data can be downloaded from here.

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  • How to create a column containing a string of stars to inidcate levels of a factor in a data frame i

    - by PaulHurleyuk
    (second question today - must be a bad day) I have a dataframe with various columns, inculding a concentration column (numeric), a flag highlighting invalid results (boolean) and a description of the problem (character) dput(df) structure(list(x = c(1, 2, 3, 4, 5, 6, 7, 8, 9, 10), rawconc = c(77.4, 52.6, 86.5, 44.5, 167, 16.2, 59.3, 123, 1.95, 181), reason = structure(c(NA, NA, 2L, NA, NA, NA, 2L, 1L, NA, NA), .Label = c("Fails Acceptance Criteria", "Poor Injection"), class = "factor"), flag = c("False", "False", "True", "False", "False", "False", "True", "True", "False", "False" )), .Names = c("x", "rawconc", "reason", "flag"), row.names = c(NA, -10L), class = "data.frame") I can create a column with the numeric level of the reason column df$level<-as.numeric(df$reason) df x rawconc reason flag level 1 1 77.40 <NA> False NA 2 2 52.60 <NA> False NA 3 3 86.50 Poor Injection True 2 4 4 44.50 <NA> False NA 5 5 167.00 <NA> False NA 6 6 16.20 <NA> False NA 7 7 59.30 Poor Injection True 2 8 8 123.00 Fails Acceptance Criteria True 1 9 9 1.95 <NA> False NA 10 10 181.00 <NA> False NA and here's what I want to do to create a column with 'level' many stars, but it fails df$stars<-paste(rep("*",df$level)sep="",collapse="") Error: unexpected symbol in "df$stars<-paste(rep("*",df$level)sep" df$stars<-paste(rep("*",df$level),sep="",collapse="") Error in rep("*", df$level) : invalid 'times' argument rep("*",df$level) Error in rep("*", df$level) : invalid 'times' argument df$stars<-paste(rep("*",pmax(df$level,0,na.rm=TRUE)),sep="",collapse="") Error in rep("*", pmax(df$level, 0, na.rm = TRUE)) : invalid 'times' argument It seems that rep needs to be fed one value at a time. I feel that this should be possible (and my gut says 'use lapply' but my apply fu is v. poor) ANy one want to try ?

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  • model.matrix() with na.action=NULL?

    - by Vincent
    I have a formula and a data frame, and I want to extract the model.matrix(). However, I need the resulting matrix to include the NAs that were found in the original dataset. If I were to use model.frame() to do this, I would simply pass it na.action=NULL. However, the output I need is of the model.matrix() format. Specifically, I need only the right-hand side variables, I need the output to be a matrix (not a data frame), and I need factors to be converted to a series of dummy variables. I'm sure I could hack something together using loops or something, but I was wondering if anyone could suggest a cleaner and more efficient workaround. Thanks a lot for your time! And here's an example: dat <- data.frame(matrix(rnorm(20),5,4), gl(5,2)) dat[3,5] <- NA names(dat) <- c(letters[1:4], 'fact') ff <- a ~ b + fact # This omits the row with a missing observation on the factor model.matrix(ff, dat) # This keeps the NA, but it gives me a data frame and does not dichotomize the factor model.frame(ff, dat, na.action=NULL) Here is what I would like to obtain: (Intercept) b fact2 fact3 fact4 fact5 1 1 0.7266086 0 0 0 0 2 1 -0.6088697 0 0 0 0 3 NA 0.4643360 NA NA NA NA 4 1 -1.1666248 1 0 0 0 5 1 -0.7577394 0 1 0 0 6 1 0.7266086 0 1 0 0 7 1 -0.6088697 0 0 1 0 8 1 0.4643360 0 0 1 0 9 1 -1.1666248 0 0 0 1 10 1 -0.7577394 0 0 0 1

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  • Deciphering an IIS6 Httperr log file

    - by smackaysmith
    We have a Windows 2003 R2 SP2 server with iis6 that is creating a 1024kb httperr file every minute. I can't figure out what I'm looking at. Here's a snippet: 2010-03-24 13:15:05 10.53.2.35 1667 10.53.2.12 80 HTTP/1.1 PUT /hserver.dll?&V01|&IMAC=0080646077AB|CID=32|CN=LWT0080646077AB|ED=1|IP=10.53.2.35|SM=255.255.255.0|GW=10.53.2.1|SN=10.53.2.255|DM=logs.com|1D=10.53.2.12|2D=10.101.2.12|0D=1|AL=/usr/sbin/netxserv|AV=4.1.0.0|CP=VIAüEstherüprocessorüü800MHz|CPS=800|RM=190512|B1=1.18|PD2=1024x768x16ü@ü60Hz|IM=6.6.2-02|CI=3600|SN#=6KHDG301300|OS=23|VI=1|P1=24|TZO=-301|TZ=CDT|FS=128|MD=2003-04|CO=|LO=|AP0=BaseüSystem|NA|6.6.2-02|AP1=RapportüAgent|NA|4.1.0-3.26|AP2=TrueType|NA|6.8.0-3.4|AP3=WebFonts|NA|2.0.4-3.6|AP4=TrueTypeüFonts|NA|6.8.0-3.5|AP5=Network_login|NA|1.0.0-1.0.3|AP6=ScreenüSaver|NA|3.13|AP7=DMonitor|NA|1.0.0-0.4.0|AP8=MozillaüFirefox_15|NA|1.5.0.8-3.6|AP9=RemoteüShadow|NA|3.17|AP10=RemoteüDesktop|NA|1.6.0-1.0|AP11=SNMP|NA|5.1.3.1-3.13|AP12=LinuxüPrinting|NA|3.8.27-3.33|AP13=SSH|NA|3.8.1-3.25|AP14=ThinPrint|NA|6.2.87-0.2|AP15=XDMCP|NA|6.8.0-3.29|AP16=Ericom|NA|8.2.0-3.29|AP17=Daylightüsavingütimeüupdate|NA|1.1.0-1.0.0| 411 - LengthRequired - What on earth am I looking at? Nothing in the system or app logs. Finally, in iis manager, Default Web Site label has boxes instead of spaces. Very odd.

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  • does red5 read tomcat-users.xml

    - by baba
    Hi, I have been busy creating an app for Red5. Imagine what was my surprise when I tried to configure basic/digest authentication and I couldn't. What struck me as strange is that I have a running tomcat instance that works and authenticates correctly with the following xmls: web.xml (part of) <security-constraint> <web-resource-collection> <web-resource-name>A Protected Page</web-resource-name> <url-pattern>/stats.jsp</url-pattern> </web-resource-collection> <auth-constraint> <description/> <role-name>tomcat</role-name> </auth-constraint> </security-constraint> <login-config> <auth-method>DIGEST</auth-method> <realm-name>BLAAAAAAAAAAAAAAAAA</realm-name> </login-config> <security-role> <description/> <role-name>tomcat</role-name> </security-role> and a tomcat-users.xml in /conf that looks kinda like this: <?xml version="1.0" encoding="UTF-8"?> <tomcat-users> <role rolename="tomcat"/> <user username="ide" password="bogus" roles="tomcat"/> </tomcat-users> The annoying thing is that configuration authenticates correctly when on tomcat's servlet container, but on the red5's modified one, it just keeps asking for authentication. Am I becoming mad or it should work like a charm? Red5 is version 0_9_1 The stats.jsp is accessible in both servlet containers, the only difference is that when you input the correct password and username in tomcat, you are logged in, and in red5 you are not, it just keeps asking you for the password. Any pointers? Am I missing something? Here is a stack trace of the error I receive AT the moment I try the login: Caused by: java.io.IOException: Unable to locate a login configuration at com.sun.security.auth.login.ConfigFile.init(ConfigFile.java:250) [na:1.6.0_22] at com.sun.security.auth.login.ConfigFile.<init>(ConfigFile.java:91) [na:1.6.0_22] ... 27 common frames omitted [ERROR] [http-127.0.0.1-5080-1] org.apache.catalina.realm.JAASRealm - Cannot find message associated with key jaasRealm.unexpectedError java.lang.SecurityException: Unable to locate a login configuration at com.sun.security.auth.login.ConfigFile.<init>(ConfigFile.java:93) [na:1.6.0_22] at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) [na:1.6.0_22] at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) [na:1.6.0_22] at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) [na:1.6.0_22] at java.lang.reflect.Constructor.newInstance(Constructor.java:513) [na:1.6.0_22] at java.lang.Class.newInstance0(Class.java:355) [na:1.6.0_22] at java.lang.Class.newInstance(Class.java:308) [na:1.6.0_22] at javax.security.auth.login.Configuration$3.run(Configuration.java:247) [na:1.6.0_22] at java.security.AccessController.doPrivileged(Native Method) [na:1.6.0_22] at javax.security.auth.login.Configuration.getConfiguration(Configuration.java:242) [na:1.6.0_22] at javax.security.auth.login.LoginContext$1.run(LoginContext.java:237) [na:1.6.0_22] at java.security.AccessController.doPrivileged(Native Method) [na:1.6.0_22] at javax.security.auth.login.LoginContext.init(LoginContext.java:234) [na:1.6.0_22] at javax.security.auth.login.LoginContext.<init>(LoginContext.java:403) [na:1.6.0_22] at org.apache.catalina.realm.JAASRealm.authenticate(JAASRealm.java:394) [catalina-6.0.24.jar:na] at org.apache.catalina.realm.JAASRealm.authenticate(JAASRealm.java:357) [catalina-6.0.24.jar:na] at org.apache.catalina.authenticator.DigestAuthenticator.findPrincipal(DigestAuthenticator.java:283) [catalina-6.0.24.jar:na] at org.apache.catalina.authenticator.DigestAuthenticator.authenticate(DigestAuthenticator.java:176) [catalina-6.0.24.jar:na] at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:523) [catalina-6.0.24.jar:na] at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) [catalina-6.0.24.jar:na] at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) [catalina-6.0.24.jar:na] at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:555) [catalina-6.0.24.jar:na] at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) [catalina-6.0.24.jar:na] at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) [catalina-6.0.24.jar:na] at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:852) [tomcat-coyote-6.0.24.jar:na] at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:588) [tomcat-coyote-6.0.24.jar:na] at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489) [tomcat-coyote-6.0.24.jar:na] at java.lang.Thread.run(Thread.java:662) [na:1.6.0_22] Caused by: java.io.IOException: Unable to locate a login configuration at com.sun.security.auth.login.ConfigFile.init(ConfigFile.java:250) [na:1.6.0_22] at com.sun.security.auth.login.ConfigFile.<init>(ConfigFile.java:91) [na:1.6.0_22] ... 27 common frames omitted In addition, here is the configuration of red5-web.properties webapp.contextPath=/project Even futher information: Seems to me like it is using the right realm: MemoryRealm [INFO] [main] org.red5.server.tomcat.TomcatLoader - Setting connector: org.apache.catalina.connector.Connector [INFO] [main] org.red5.server.tomcat.TomcatLoader - Address to bind: /127.0.0.1:5080 [INFO] [main] org.red5.server.tomcat.TomcatLoader - Setting realm: org.apache.catalina.realm.MemoryRealm [INFO] [main] org.red5.server.tomcat.TomcatLoader - Loading tomcat context [INFO] [main] org.red5.server.tomcat.TomcatLoader - Server root: C:/Program Files/Red5 [INFO] [main] org.red5.server.tomcat.TomcatLoader - Config root: C:/Program Files/Red5/conf [INFO] [main] org.red5.server.tomcat.TomcatLoader - Application root: C:/Program Files/Red5/webapps [INFO] [main] org.red5.server.tomcat.TomcatLoader - Starting Tomcat servlet engine [INFO] [main] org.apache.catalina.startup.Embedded - Starting tomcat server [INFO] [main] org.apache.catalina.core.StandardEngine - Starting Servlet Engine: Apache Tomcat/6.0.26 However, immediately after bootstraping Tomcat, I am presented with the following error: Exception in thread "Launcher:/administration" org.springframework.beans.factory.BeanDefinitionStoreException: Could not resolve bean definition resource pattern [/WEB-INF/red5-*.xml]; nested exception is java.io.FileNotFoundException: ServletContext resource [/WEB-INF/] cannot be resolved to URL because it does not exist at org.springframework.beans.factory.support.AbstractBeanDefinitionReader.loadBeanDefinitions(AbstractBeanDefinitionReader.java:190) at org.springframework.beans.factory.support.AbstractBeanDefinitionReader.loadBeanDefinitions(AbstractBeanDefinitionReader.java:149) at org.springframework.web.context.support.XmlWebApplicationContext.loadBeanDefinitions(XmlWebApplicationContext.java:124) at org.springframework.web.context.support.XmlWebApplicationContext.loadBeanDefinitions(XmlWebApplicationContext.java:93) at org.springframework.context.support.AbstractRefreshableApplicationContext.refreshBeanFactory(AbstractRefreshableApplicationContext.java:130) at org.springframework.context.support.AbstractApplicationContext.obtainFreshBeanFactory(AbstractApplicationContext.java:458) at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:388) at org.red5.server.tomcat.TomcatLoader$1.run(TomcatLoader.java:594) Caused by: java.io.FileNotFoundException: ServletContext resource [/WEB-INF/] cannot be resolved to URL because it does not exist at org.springframework.web.context.support.ServletContextResource.getURL(ServletContextResource.java:132) at org.springframework.core.io.support.PathMatchingResourcePatternResolver.isJarResource(PathMatchingResourcePatternResolver.java:414) at org.springframework.core.io.support.PathMatchingResourcePatternResolver.findPathMatchingResources(PathMatchingResourcePatternResolver.java:343) at org.springframework.core.io.support.PathMatchingResourcePatternResolver.getResources(PathMatchingResourcePatternResolver.java:282) at org.springframework.context.support.AbstractApplicationContext.getResources(AbstractApplicationContext.java:1156) at org.springframework.beans.factory.support.AbstractBeanDefinitionReader.loadBeanDefinitions(AbstractBeanDefinitionReader.java:177) ... 7 more This error is kinda strange, because after this it seems that /WEB-INF/ is found by the rest of the program by the following output: [INFO] [Launcher:/SOSample] org.springframework.beans.factory.config.PropertyPlaceholderConfigurer - Loading properties file from ServletContext resource [/WEB-INF/red5-web.properties] [INFO] [Launcher:/installer] org.springframework.beans.factory.config.PropertyPlaceholderConfigurer - Loading properties file from ServletContext resource [/WEB-INF/red5-web.properties] [INFO] [Launcher:/] org.springframework.beans.factory.config.PropertyPlaceholderConfigurer - Loading properties file from ServletContext resource [/WEB-INF/red5-web.properties] [INFO] [Launcher:/LiveMedia] org.springframework.beans.factory.config.PropertyPlaceholderConfigurer - Loading properties file from ServletContext resource [/WEB-INF/red5-web.properties] What really annoys me is that, as you can see in the output, when I try to login, I get a JAASRealm-related exception, but in the debug output when Tomcat is loading, it is clear to me that it expects a MemoryRealm. I was wondering where and how in red5.xml should I specify bean properties such that I force red5 to use MemoryRealm that is under /conf/tomcat-users.xml, because it certainly doesn't do so now. It seems like the biggest question I have posted so far, but I tried to explain it as fully as possible as to avoid confusion.

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  • How do I replace values within a data frame with a string in R?

    - by Arturito
    short version: How do I replace values within a data frame with a string found within another data frame? longer version: I'm a biologist working with many species of bees. I have a data set with many thousands of bees. Each row has a unique bee ID # along with all the relevant info about that specimen (data of capture, GPS location, etc). The species information for each bee has not been entered because it takes a long time to ID them. When IDing, I end up with boxes of hundred of bees, all of the same species. I enter these into a separate data frame. I am trying to write code that will update the original data file with species information (family, genus, species, sex, etc) as I ID the bees. Currently, in the original data file, the species info is blank and is interpreted as NA within R. I want to have R find all unique bee ID #'s and fill in the species info, but I am having trouble figuring out how to replace the NA values with a string (e.g. "Andrenidae") Here is a simple example of what I am trying to do: rawData<-data.frame(beeID=c(1:20),family=rep(NA,20)) speciesInfo<-data.frame(beeID=seq(1,20,3),family=rep("Andrenidae",7)) rawData[rawData$beeID == 4,"family"] <- speciesInfo[speciesInfo$beeID == 4,"family"] So, I am replacing things as I want, but with a number rather than the family name (a string). What I would eventually like to do is write a little loop to add in all the species info, e.g.: for (i in speciesInfo$beeID){ rawData[rawData$beeID == i,"family"] <- speciesInfo[speciesInfo$beeID == i,"family"] } Thanks in advance for any advice! Cheers, Zak EDIT: I just noticed that the first two methods below add a new column each time, which would cause problems if I needed to add species info multiple times (which I typically do). For example: rawData<-data.frame(beeID=c(1:20),family=rep(NA,20)) Andrenidae<-data.frame(beeID=seq(1,20,3),family=rep("Andrenidae",7)) Halictidae<-data.frame(beeID=seq(1,20,3)+1,family=rep("Halictidae",7)) # using join library(plyr) rawData <- join(rawData, Andrenidae, by = "beeID", type = "left") rawData <- join(rawData, Halictidae, by = "beeID", type = "left") # using merge rawData <- merge(x=rawData,y=Andrenidae,by='beeID',all.x=T,all.y=F) rawData <- merge(x=rawData,y=Halictidae,by='beeID',all.x=T,all.y=F) Is there a way to either collapse the columns so that I have one, unified data frame? Or a way to update the rawData rather than adding a new column each time? Thanks in advance!

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  • Import a number of csv files and replace NA by Zeros

    - by tao.hong
    I know how to do this individually. However, I have more than 1000 files. I decided to use a for loop. However, it seems like I did not find the correct way to evaluate my variables. Here is my code setwd('C:/data') filenames=dir() #find file names for (i in filenames){ adt = substr(x = i, start = 1, stop = nchar(i)-4) name=paste("data_", adt, sep="") assign(name, read.csv(i,header=T,sep=",")) #read each file and assign a variable name starting with data_ to it func=paste('name[is.na(name)] <- 0',sep="") # here is the place I have problem. R will not consider name is a parameter whose values change in each iteration eval((text=func)) }

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  • Oracle 9i Session Disconnections

    - by mlaverd
    I am in a development environment, and our test Oracle 9i server has been misbehaving for a few days now. What happens is that we have our JDBC connections disconnecting after a few successful connections. We got this box set up by our IT department and handed over to. It is 'our problem', so options like 'ask you DBA' isn't going to help me. :( Our server is set up with 3 plain databases (one is the main dev db, the other is the 'experimental' dev db). We use the Oracle 10 ojdbc14.jar thin JDBC driver (because of some bug in the version 9 of the driver). We're using Hibernate to talk to the DB. The only thing that I can see that changed is that we now have more users connecting to the server. Instead of one developer, we now have 3. With the Hibernate connection pools, I'm thinking that maybe we're hitting some limit? Anyone has any idea what's going on? Here's the stack trace on the client: Caused by: org.hibernate.exception.GenericJDBCException: could not execute query at org.hibernate.exception.SQLStateConverter.handledNonSpecificException(SQLStateConverter.java:126) [hibernate3.jar:na] at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:114) [hibernate3.jar:na] at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:66) [hibernate3.jar:na] at org.hibernate.loader.Loader.doList(Loader.java:2235) [hibernate3.jar:na] at org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2129) [hibernate3.jar:na] at org.hibernate.loader.Loader.list(Loader.java:2124) [hibernate3.jar:na] at org.hibernate.loader.hql.QueryLoader.list(QueryLoader.java:401) [hibernate3.jar:na] at org.hibernate.hql.ast.QueryTranslatorImpl.list(QueryTranslatorImpl.java:363) [hibernate3.jar:na] at org.hibernate.engine.query.HQLQueryPlan.performList(HQLQueryPlan.java:196) [hibernate3.jar:na] at org.hibernate.impl.SessionImpl.list(SessionImpl.java:1149) [hibernate3.jar:na] at org.hibernate.impl.QueryImpl.list(QueryImpl.java:102) [hibernate3.jar:na] ... Caused by: java.sql.SQLException: Io exception: Connection reset at oracle.jdbc.driver.DatabaseError.throwSqlException(DatabaseError.java:112) [ojdbc14.jar:Oracle JDBC Driver version - "10.2.0.4.0"] at oracle.jdbc.driver.DatabaseError.throwSqlException(DatabaseError.java:146) [ojdbc14.jar:Oracle JDBC Driver version - "10.2.0.4.0"] at oracle.jdbc.driver.DatabaseError.throwSqlException(DatabaseError.java:255) [ojdbc14.jar:Oracle JDBC Driver version - "10.2.0.4.0"] at oracle.jdbc.driver.T4CPreparedStatement.executeForDescribe(T4CPreparedStatement.java:829) [ojdbc14.jar:Oracle JDBC Driver version - "10.2.0.4.0"] at oracle.jdbc.driver.OracleStatement.executeMaybeDescribe(OracleStatement.java:1049) [ojdbc14.jar:Oracle JDBC Driver version - "10.2.0.4.0"] at oracle.jdbc.driver.T4CPreparedStatement.executeMaybeDescribe(T4CPreparedStatement.java:854) [ojdbc14.jar:Oracle JDBC Driver version - "10.2.0.4.0"] at oracle.jdbc.driver.OracleStatement.doExecuteWithTimeout(OracleStatement.java:1154) [ojdbc14.jar:Oracle JDBC Driver version - "10.2.0.4.0"] at oracle.jdbc.driver.OraclePreparedStatement.executeInternal(OraclePreparedStatement.java:3370) [ojdbc14.jar:Oracle JDBC Driver version - "10.2.0.4.0"] at oracle.jdbc.driver.OraclePreparedStatement.executeQuery(OraclePreparedStatement.java:3415) [ojdbc14.jar:Oracle JDBC Driver version - "10.2.0.4.0"] at org.hibernate.jdbc.AbstractBatcher.getResultSet(AbstractBatcher.java:208) [hibernate3.jar:na] at org.hibernate.loader.Loader.getResultSet(Loader.java:1812) [hibernate3.jar:na] at org.hibernate.loader.Loader.doQuery(Loader.java:697) [hibernate3.jar:na] at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:259) [hibernate3.jar:na] at org.hibernate.loader.Loader.doList(Loader.java:2232) [hibernate3.jar:na]

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  • Get positions for NAs only in the "middle" of a matrix column

    - by Abiel
    I want to obtain an index that refers to the positions of NA values in a matrix where the index is true if a given cell is NA and there is at least one non-NA value before and after it in the column. For example, given the following matrix [,1] [,2] [,3] [,4] [1,] NA 1 NA 1 [2,] 1 NA NA 2 [3,] NA 2 NA 3 the only value of the index that comes back TRUE should be [2,2]. Is there a compact expression for what I want to do? If I had to I could loop through columns and use something like min(which(!is.na(x[,i]))) to find the first non-NA value in each column, and then set all values before that to FALSE (and the same for all values after the max). This way I would not select leading and trailing NA values. But this seems a bit messy, so I'm wondering if there is a cleaner expression that does this without loops.

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  • tableView:didSelectRowAtIndexPath: calls TTNavigator openURLAction:applyAnimated: — UITabBar and na

    - by vikingosegundo
    I have an existing iphone project with a UITabBar. Now I need styled text and in-text links to other ViewControllers in my app. I am trying to integrate TTStyledTextLabel. I have a FirstViewController:UITabelViewController with this tableView:didSelectRowAtIndexPath: - (void)tableView:(UITableView *)tableView didSelectRowAtIndexPath:(NSIndexPath *)indexPath { NSString *url; if ([self.filteredQuestions count]>0) { url = [NSString stringWithFormat:@"%@%d", @"tt://question/", [[self.filteredQuestions objectAtIndex:indexPath.row] id]]; [[TTNavigator navigator] openURLAction:[[TTURLAction actionWithURLPath: url] applyAnimated:YES]]; } else { Question * q = [self.questions objectAtIndex:indexPath.row] ; url = [NSString stringWithFormat:@"%@%d", @"tt://question/", [q.id intValue]]; } TTDPRINT(@"%@", url); TTNavigator *navigator = [TTNavigator navigator]; [navigator openURLAction:[[TTURLAction actionWithURLPath: url] applyAnimated:YES]]; } My mapping looks like this: TTNavigator* navigator = [TTNavigator navigator]; navigator.window = window; navigator.supportsShakeToReload = YES; TTURLMap* map = navigator.URLMap; [map from:@"*" toViewController:[TTWebController class]]; [map from:@"tt://question/(initWithQID:)" toViewController:[QuestionDetailViewController class]]; and my QuestionDetailViewController: @interface QuestionDetailViewController : UIViewController <UIScrollViewDelegate , QuestionDetailViewProtocol> { Question *question; } @property(nonatomic,retain) Question *question; -(id) initWithQID:(NSString *)qid; -(void) goBack:(id)sender; @end When I hit a cell, q QuestionDetailViewController will be called — but the navigationBar wont @implementation QuestionDetailViewController @synthesize question; -(id) initWithQID:(NSString *)qid { if (self = [super initWithNibName:@"QuestionDetailViewController" bundle:nil]) { //; TTDPRINT(@"%@", qid); NSManagedObjectContext *managedObjectContext = [(domainAppDelegate*)[[UIApplication sharedApplication] delegate] managedObjectContext]; NSPredicate *predicate =[NSPredicate predicateWithFormat:@"id == %@", qid]; NSEntityDescription *entity = [NSEntityDescription entityForName:@"Question" inManagedObjectContext:managedObjectContext]; NSFetchRequest *request = [[NSFetchRequest alloc] init]; [request setEntity:entity]; [request setPredicate:predicate]; NSError *error = nil; NSArray *array = [managedObjectContext executeFetchRequest:request error:&error]; if (error==nil && [array count]>0 ) { self.question = [array objectAtIndex:0]; } else { TTDPRINT(@"error: %@", array); } } return self; } - (void)viewDidLoad { [super viewDidLoad]; [TTStyleSheet setGlobalStyleSheet:[[[TextTestStyleSheet alloc] init] autorelease]]; [self.navigationController.navigationBar setTranslucent:YES]; NSArray *includedLinks = [self.question.answer.text vs_extractExternalLinks]; NSMutableDictionary *linksToTT = [[NSMutableDictionary alloc] init]; for (NSArray *a in includedLinks) { NSString *s = [a objectAtIndex:3]; if ([s hasPrefix:@"/answer/"] || [s hasPrefix:@"http://domain.com/answer/"] || [s hasPrefix:@"http://www.domain.com/answer/"]) { NSString *ttAdress = @"tt://question/"; NSArray *adressComps = [s pathComponents]; for (NSString *s in adressComps) { if ([s isEqualToString:@"qid"]) { ttAdress = [ttAdress stringByAppendingString:[adressComps objectAtIndex:[adressComps indexOfObject:s]+1]]; } } [linksToTT setObject:ttAdress forKey:s]; } } for (NSString *k in [linksToTT allKeys]) { self.question.answer.text = [self.question.answer.text stringByReplacingOccurrencesOfString:k withString: [linksToTT objectForKey:k]]; } TTStyledTextLabel *answerText = [[[TTStyledTextLabel alloc] initWithFrame:CGRectMake(0, 0, 320, 700)] autorelease]; if (![[self.question.answer.text stringByTrimmingCharactersInSet:[NSCharacterSet whitespaceCharacterSet]] hasPrefix:@"<div"]) { self.question.answer.text = [NSString stringWithFormat:@"%<div>%@</div>", self.question.answer.text]; } NSString * s = [NSString stringWithFormat:@"<div class=\"header\">%@</div>\n%@",self.question.title ,self.question.answer.text]; answerText.text = [TTStyledText textFromXHTML:s lineBreaks:YES URLs:YES]; answerText.contentInset = UIEdgeInsetsMake(20, 15, 20, 15); [answerText sizeToFit]; [self.navigationController setNavigationBarHidden:NO animated:YES]; [self.view addSubview:answerText]; [(UIScrollView *)self.view setContentSize:answerText.frame.size]; self.view.backgroundColor = [UIColor whiteColor]; [linksToTT release]; } ....... @end This works quite nice, as soon as a cell is touched, a QuestionDetailViewController is called and pushed — but the tabBar will disappear, and the navigationItem — I set it like this: self.navigationItem.title =@"back to first screen"; — won't be shown. And it just appears without animation. But if I press a link inside the TTStyledTextLabel the animation works, the navigationItem will be shown. How can I make the animation, the navigationItem and the tabBar be shown?

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  • How can I inject Javascript (including Prototype.js) in other sites without cluttering the global na

    - by Daniel Magliola
    I'm currently on a project that is a big site that uses the Prototype library, and there is already a humongous amount of Javascript code. We're now working on a piece of code that will get "injected" into other people's sites (picture people adding a <script> tag in their sites) which will then run our code and add a bunch of DOM elements and functionality to their site. This will have new pieces of code, and will also reuse a lot of the code that we use on our main site. The problem I have is that it's of course not cool to just add a <script> that will include Prototype in people's pages. If we do that in a page that's already using ANY framework, we're guaranteed to screw everything up. jQuery gives us the option to "rename" the $ object, so it could handle this situation decently, except obviously for the fact that we're not using jQuery, so we'd have to migrate everything. Right now i'm contemplating a number of ugly choices, and I'm not sure what's best... Rewrite everything to use jQuery, with a renamed $ object everywhere. Creating a "new" Prototype library with only the subset we'd be using in "injected" code, and renaming $ to something else. Then again I'd have to adapt the parts of my code that would be shared somehow. Not using a library at all in injected code, to keep it as clean as possible, and rewriting the shared code to use no library at all. This would obviously degenerate into us creating our own frankenstein of a library, which is probably the worst case scenario ever. I'm wondering what you guys think I could do, and also whether there's some magic option that would solve all my problems... For example, do you think I could use something like Caja / Cajita to sandbox my own code and isolate it from the rest of the site, and have Prototype inside of there? Or am I completely missing the point with that? I also read once about a technique for bookmarklets, were you add your code like this: (function() { /* your code */ })(); And then your code is all inside your anonymous function and you haven't touched the global namespace at all. Do you think I could make one file containing: (function() { /* Full Code of the Prototype file here */ /* All my code that will run in the "other" site */ InitializeStuff_CreateDOMElements_AttachEventHandlers(); })(); Would that work? Would it accomplish the objective of not cluttering the global namespace, and not killing the functionality on a site that uses jQuery, for example? Or is Prototype too complex somehow to isolate it like that? (NOTE: I think I know that that would create closures everywhere and that's slower, but I don't care too much about performance, my code is not doing anything that complex)

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  • Oracle 9i Session Disconnections

    - by mlaverd
    [Cross-Posting from ServerFault] I am in a development environment, and our test Oracle 9i server has been misbehaving for a few days now. What happens is that we have our JDBC connections disconnecting after a few successful connections. We got this box set up by our IT department and handed over to. It is 'our problem', so options like 'ask you DBA' isn't going to help me. :( Our server is set up with 3 plain databases (one is the main dev db, the other is the 'experimental' dev db). We use the Oracle 10 ojdbc14.jar thin JDBC driver (because of some bug in the version 9 of the driver). We're using Hibernate to talk to the DB. The only thing that I can see that changed is that we now have more users connecting to the server. Instead of one developer, we now have 3. With the Hibernate connection pools, I'm thinking that maybe we're hitting some limit? Anyone has any idea what's going on? Here's the stack trace on the client: Caused by: org.hibernate.exception.GenericJDBCException: could not execute query at org.hibernate.exception.SQLStateConverter.handledNonSpecificException(SQLStateConverter.java:126) [hibernate3.jar:na] at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:114) [hibernate3.jar:na] at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:66) [hibernate3.jar:na] at org.hibernate.loader.Loader.doList(Loader.java:2235) [hibernate3.jar:na] at org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2129) [hibernate3.jar:na] at org.hibernate.loader.Loader.list(Loader.java:2124) [hibernate3.jar:na] at org.hibernate.loader.hql.QueryLoader.list(QueryLoader.java:401) [hibernate3.jar:na] at org.hibernate.hql.ast.QueryTranslatorImpl.list(QueryTranslatorImpl.java:363) [hibernate3.jar:na] at org.hibernate.engine.query.HQLQueryPlan.performList(HQLQueryPlan.java:196) [hibernate3.jar:na] at org.hibernate.impl.SessionImpl.list(SessionImpl.java:1149) [hibernate3.jar:na] at org.hibernate.impl.QueryImpl.list(QueryImpl.java:102) [hibernate3.jar:na] ... Caused by: java.sql.SQLException: Io exception: Connection reset at oracle.jdbc.driver.DatabaseError.throwSqlException(DatabaseError.java:112) [ojdbc14.jar:Oracle JDBC Driver version - "10.2.0.4.0"] at oracle.jdbc.driver.DatabaseError.throwSqlException(DatabaseError.java:146) [ojdbc14.jar:Oracle JDBC Driver version - "10.2.0.4.0"] at oracle.jdbc.driver.DatabaseError.throwSqlException(DatabaseError.java:255) [ojdbc14.jar:Oracle JDBC Driver version - "10.2.0.4.0"] at oracle.jdbc.driver.T4CPreparedStatement.executeForDescribe(T4CPreparedStatement.java:829) [ojdbc14.jar:Oracle JDBC Driver version - "10.2.0.4.0"] at oracle.jdbc.driver.OracleStatement.executeMaybeDescribe(OracleStatement.java:1049) [ojdbc14.jar:Oracle JDBC Driver version - "10.2.0.4.0"] at oracle.jdbc.driver.T4CPreparedStatement.executeMaybeDescribe(T4CPreparedStatement.java:854) [ojdbc14.jar:Oracle JDBC Driver version - "10.2.0.4.0"] at oracle.jdbc.driver.OracleStatement.doExecuteWithTimeout(OracleStatement.java:1154) [ojdbc14.jar:Oracle JDBC Driver version - "10.2.0.4.0"] at oracle.jdbc.driver.OraclePreparedStatement.executeInternal(OraclePreparedStatement.java:3370) [ojdbc14.jar:Oracle JDBC Driver version - "10.2.0.4.0"] at oracle.jdbc.driver.OraclePreparedStatement.executeQuery(OraclePreparedStatement.java:3415) [ojdbc14.jar:Oracle JDBC Driver version - "10.2.0.4.0"] at org.hibernate.jdbc.AbstractBatcher.getResultSet(AbstractBatcher.java:208) [hibernate3.jar:na] at org.hibernate.loader.Loader.getResultSet(Loader.java:1812) [hibernate3.jar:na] at org.hibernate.loader.Loader.doQuery(Loader.java:697) [hibernate3.jar:na] at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:259) [hibernate3.jar:na] at org.hibernate.loader.Loader.doList(Loader.java:2232) [hibernate3.jar:na]

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