Wonder if anyone has had this issue. I've integrated Bootstrap nicely into a Magento theme I'm building, all good. That is, until I try using the accordian functions. There seems to be an issue with the code finding the Prototype Libs Methods instead of jQuery's. I've tried the usual fixes, $ - jQuery and no conflict but it only works when I disable the prototype lib - which obviously is not good. Anyone out there come across this and can advise me on a work round? At the moment I'm resigned to using Scriptaculous for the accordian.